I'm not sure about Cyberknife treatment, but it sounds like the "Radiation Therapy" (what my oncologist called it) I had for prostate cancer. After 2 weeks/10 treatments, I lost control of my rectum and my stools started getting flat instead of round. This may or may not be part of your problem. I do remember some discomfort at first, but not really painful.
October 1st will be 6 years since my last treatment and I still can't stop/hold a bowel movement. The flat stools lasted over 9 months and gradually got back to round after a year; although, I still have several flat ones every now and then, there's not any indication of why.
Doctors say it Radiation Cystitis and it could possibly heal itself (praying), so far, I've learned to live with it. Meaning: staying close a readily available restroom with anything in my stomach. I've gone from <30 seconds of feeling the bowel movement to anywhere from 30 seconds to 2-3 minutes.
BTW, I'm now in my mid-60s.
Hope everything works out for you!